Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs7589395 chr2:40356512 A/T 1.47E-5 506 22.73 21.23 7.13 KM Plot
LGG rs759056 chr7:127562465 G/A 1.74E-5 509 14.32 26.4 21.77 KM Plot
LGG rs75920213 chr5:157033431 T/C 8.42E-6 487 21.7 24.82 8.03 KM Plot
LGG rs7594050 chr2:74404937 G/A 2.48E-5 497 21.7 25.13 11.57 KM Plot
LGG rs75989773 chr2:74394603 C/A 3.11E-5 498 21.7 25.2 11.57 KM Plot
LGG rs76073111 chr18:72056243 A/G 7.88E-5 507 22.78 21.6 6.7 KM Plot
LGG rs76093530 chr5:169046540 G/A 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs76105305 chr5:169058558 C/G 2.07E-8 499 22.12 23.85 6.83 KM Plot
LGG rs76203304 chr6:53129261 G/A 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs76312094 chr16:8709447 TA/T 4.07E-5 509 9.93 17.58 24.03 KM Plot
LGG rs76348272 chr5:169004460 G/C 1.58E-8 507 22.37 23.63 6.83 KM Plot
LGG rs76534839 chr5:157005244 T/A 4.04E-6 485 21.78 24.28 8.03 KM Plot
LGG rs76550320 chr2:74404270 T/C 2.6E-5 495 21.7 24.68 11.57 KM Plot
LGG rs765867 chr10:869901 G/T 4.81E-7 507 21.7 24.52 14.43 KM Plot
LGG rs76632280 chr5:168965578 C/T 1.46E-8 509 22.37 23.63 6.83 KM Plot